rs32984794 SNP Detail

Summary

• ID
  rs32984794
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152422407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACACTCC CTCGGCGTGT
  AGCCAGAAGC ACGACATGAG GATGACTCGG ACTTTACAGG ACTTTGTGGG ATTGGAGAGC
  TGGTGACCCC ACAACTTCTG TGCTCTTAAA GTTGCTGTGA GACCTTGGCT GCACCAGGCT
  GAACGCTCTC ATTTAAAATT CTAGTCTTGC TCCCCAGGGC TCCAGCATCC AGCTTCACCT
  Y
  TAACAAGCAG GACTGGCTGG CAGTCGCCAA CCCTTCTGCT AGGCGACAGG TGTCCTGAGT
  GGCAGTCCAG GGCACAGACC ATACAGAGCT CCAGGGACCT GGATGTGTTT GAGCTGGACA
  CAGACCAATT TTGGAAAGAG GGCAAGTGTT GGGGGCGGGG GGTGGGTGGG TGGGTGGGTG
  GGTGGGTGAG AAGCCATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45721663	mCV23462806	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148080979	ENSMUSSNP3748163	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss321434227	CHEV_4_151712059	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32984794					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152422407 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	701 bp upstream
Cpgi15412	CpG island 15412	277 bp proximal
Rr605852	regulatory region 605852	250 bp proximal
Rr605853	regulatory region 605853	948 bp proximal
Tssr40549	transcription start site region 40549	669 bp upstream
Tssr40550	transcription start site region 40550	767 bp upstream
Tssr40551	transcription start site region 40551	865 bp upstream
Tssr40552	transcription start site region 40552	964 bp upstream
Tssr40553	transcription start site region 40553	1024 bp upstream