rs32980829 SNP Detail

Summary

• ID
  rs32980829
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138464956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC CTAATAGCCC TGCACAGCTG
  K
  CAGAGGGACC TGAAACATAA AGCGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45721266	mCV24059900	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss147655638	ENSMUSSNP843925	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss321376631	CHEV_4_138293560	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32980829					SNP	G	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138464956 () rs orientation: forward

Symbol	Name	Function Class
Gm57720	predicted gene, 57720	within coordinates
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603004	regulatory region 603004	1727 bp distal
Rr603005	regulatory region 603005	1653 bp distal
Rr603006	regulatory region 603006	489 bp distal
Rr603007	regulatory region 603007	88 bp distal
Rr603008	regulatory region 603008	1444 bp proximal
Ubxn10	UBX domain protein 10	Intron