rs32978096 SNP Detail

Summary

• ID
  rs32978096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:92259494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATATTTC CCATTTCGTA
  GAGTCCCAGT CAAGCCAGTC ATGCATGGAT TTGCATTTTG GTTTGGAAAT TTTGGGACCT
  GCCCACTATC AGTCAGTGTT GCTCCCACTC GACTGGCCAG ATAGTCCTAT AAATTGGTCC
  TTGACTGTGA GACTGCAGAC TCCTGGTACT CAGGTCCTAG GCTACTTTGG AGAACCTGGC
  R
  AGTGTCTTTT CTTGAGTTGC TCTGTCATGT TGTTCTTCCT ATGTGCTGTA GTCAATTTTG
  AGGTAGTGTG TGTCTTGAGT TCAGTTTTGA TCAAGGGATG AATGGTAGCT AGCTAGCAGT
  CAGAAAATTA GCAGTGGATA CAATAGCCAA TTGTGATAAG TGGCTTTTTG TTACATTTGG
  TAAGTTGTAG AACAGAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46755735	NES10731413	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	G	A	A	G
ss135481017	ENSMUSSNP4252292	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32978096					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46755735	NES10731413	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92259494 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Sprr2e	small proline-rich protein 2E			Intron
				Splice-Site
Tssr30284	transcription start site region 30284			43 bp downstream