rs32972579 SNP Detail

Summary

• ID
  rs32972579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152362321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGGCAGA ACACTCATAC
  ATATAGTACA AAAATAAATA AATCCAAAGA CACTCAGTTT TGGCCCAGCC TGGCCTGAGA
  CTGTAAGCGA ACAGGTGGCT TGTAAGAAAG TTCAGATTCA GGGCTGGTGA GATGGCTCAG
  TGGGTAAGAG CACCCAACTG CTCTTCCGAA GGTCTGAAGT TCAAATCCCA GCAACCACAC
  R
  GTGGCTCACA ACCATCTGTA ACAAGATCTG ACGCCCTCTT CTGGAGTGTC TGAAGACAGC
  TACAGTGTAC TTACATATAA TAAATAAATC TTTAAAAAAA TAAAATAAAA GAAAGTTCAG
  ATTCTAGGCT GGAGAGATGG CTCAGTTAAG AACACTTGCT ACTCTTCCAG ACCACCTGTG
  TTCAGTTCCC AGCATCCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45720524	mCV23461044	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss148080252	ENSMUSSNP3920282	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss321434050	CHEV_4_151651973	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32972579					SNP	A	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152362321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15402	CpG island 15402	1240 bp proximal
Gpr153	G protein-coupled receptor 153	Intron
Rr605819	regulatory region 605819	1031 bp distal
Rr605820	regulatory region 605820	1316 bp distal
Rr605821	regulatory region 605821	28 bp proximal
Rr605822	regulatory region 605822	231 bp proximal
Rr605823	regulatory region 605823	411 bp proximal
Rr605824	regulatory region 605824	954 bp proximal