rs32971944 SNP Detail

Summary

• ID
  rs32971944
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127305426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGACTGGG ATGTGTTTCG CACACAGAGG AGCGTGTGGA
  AGACTGGAAG ATAGCAGTAC TGGGTGACCT AGAAGGTGCC AGAGGCTCCG CTTCAGCCAC
  W
  AACATACCCT GCTTCCCAGA CATATCACCT ACCCCAAGAT CCCCTCTGTG TCATATGGGA
  AGGGTCCACA GGCAAGTGAC AGTCATAGGA GGCGGTAGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45220215	mCV25209041	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss147530699	ENSMUSSNP2699337	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32971944					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127305426 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnip3	Kv channel interacting protein 3, calsenilin			Intron
				Noncoding-Transcript-Variant
Rr564528	regulatory region 564528			725 bp distal
Rr564529	regulatory region 564529			1019 bp distal
Tssr20021	transcription start site region 20021			512 bp downstream