rs32971252 SNP Detail

Summary

• ID
  rs32971252
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164250172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCCCGAG ACCCAGAAGT
  TGAACTTTGA AGAGCAGCCG GACTCCAGGG TGAGGCTGCA CTAGAGAGCA TCAGATTCCT
  GCTCCTGGCG TTGCCTCTTT TTTTTTTCTT TTTGTAGAGG AGGCAAAACT GTAGACTCCC
  CAAGTCCCCT CCAGAAGCCA AAAGGCAACT GGGGAGGCCA GAGGGTGGGT TCTGACCTAG
  W
  CCCTAGATTA GTACGGTTTC TTGTCCTAAT GGTAAGGATG TCATAACTGC GGAAGGTTGG
  CTCTTCCGCT GGCAAAGTTG AGATAAGGCC TGCCGCATCC CCTTGAGCCC CGTAGGAATT
  TGGTTGTGCC AAGACCCTGT ACATCTCGGA CGCCGATAAG AGGAAGCACT TCCGGCTGGT
  GCTGCGACTG GTGCTGCGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45219831	mCV23181627	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss148224530	ENSMUSSNP3123505	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320605792	CHEV_2_164233752	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32971252					SNP	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164250172 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12658	CpG island 12658			within coordinates
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569601	regulatory region 569601			555 bp distal
Rr569602	regulatory region 569602			333 bp distal