rs32967267 SNP Detail

Summary

• ID
  rs32967267
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153082246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTCTTTGGA GTCCCTTTGA TTCCCTATTT CCTCAGATTC CCGCTGCCTC CCAGCCCTGG
  GGAGGCCTGG AGCAAATGGC TGCAACTCAC TCGGGCCTCA TTTTCACCTA CCACCCCTCC
  GCAACTTAGC AGCCTTTCCC CCAAGAGGAG AGGGTTAGAA ACCCAAGGCC AGACTTATCA
  CAGCCCCAGG CTGACAGGTG GAAAAACACA CAAGCCAGGA GTCGGTATGC TTGCAGGTGA
  AAGCCCCAAC TCCCAACACG GCCAGGAACG CGGCCCGCCA CCGCGCCACC GCCCCCCCTC
  S
  CCCCCCCCCC CGCGACCCCG ATCTGTTCCA AGCTGGACTG AAGCATGGGG CTGAAGTTGT
  AGGAAGTCTG GCCCTTAGGC CAGCGGATAG ACTACCCTAT TTTGTAGTGT GAAATGTTAA
  ATTCTCCCCA CAATTGGAAG GTGGATGTAA AGAGTGGAGA CAAGAGACGG GAATTCAATA
  GTAAGTCTAA AAAGTCTAAT AGGATCTGGG GTGGGAAGAG CAAGCATGCA CGGTAAAGAA
  TTACGAGCAC GTTATTTGAG TCTCTAAGAG ACCCCATGGG GGGAAGAGGT AGGGAGATTC
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45219404	mCV23160832	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32967267					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153082246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	501 bp proximal
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Pofut1	protein O-fucosyltransferase 1	1207 bp upstream
Rr567587	regulatory region 567587	1560 bp distal
Rr567588	regulatory region 567588	within coordinates
Rr567589	regulatory region 567589	1090 bp proximal
Rr567590	regulatory region 567590	1630 bp proximal
Tssr20880	transcription start site region 20880	589 bp upstream
Tssr20881	transcription start site region 20881	603 bp upstream
Tssr20882	transcription start site region 20882	1126 bp upstream
Tssr20883	transcription start site region 20883	1176 bp upstream
Tssr20884	transcription start site region 20884	1281 bp upstream
Tssr26895	transcription start site region 26895	1017 bp downstream
Tssr26896	transcription start site region 26896	1032 bp downstream
Tssr26897	transcription start site region 26897	1076 bp downstream
Tssr26898	transcription start site region 26898	1171 bp downstream
Tssr26899	transcription start site region 26899	1383 bp downstream