rs32960607 SNP Detail

Summary

• ID
  rs32960607
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148249824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT TAAGGCTTGC TTACCCCCTT
  M
  ATGTACACAC ACACACACAC ACACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
ss45718606	mCV24937921	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss147994767	ENSMUSSNP3896457	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss321417760	CHEV_4_147539476	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
rs32960607					SNP	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148249824 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15296	CpG island 15296			283 bp distal
Cpgi15297	CpG island 15297			284 bp proximal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Gm68449	predicted gene, 68449			127 bp downstream
Rr604610	regulatory region 604610			936 bp distal
Rr604611	regulatory region 604611			1880 bp proximal
Tssr40267	transcription start site region 40267			1128 bp downstream
Tssr44601	transcription start site region 44601			999 bp downstream