rs32956448 SNP Detail

Summary

• ID
  rs32956448
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153083886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGCCTGGG TACAGAGGAC CCATTGGTGT TCAACTTGCC
  ATTCGACAGA TGGGAGAAGT TAAGTGACTC ACTCGAGGTC TAATCAGTCT CAGATCAGTA
  R
  ATGGAGTTTG TAGGACAAGA CCTGCCCGCA CTGTCTCGTG GCAATTCTTG CATTCATTCA
  GCAAAGAATT TATATGCCCC CCCCCCTTTT TTTTAATGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45218050	mCV23160855	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss147988426	ENSMUSSNP6147990	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs32956448					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153083886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	74 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	608 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	551 bp distal
Rr567589	regulatory region 567589	378 bp distal
Rr567590	regulatory region 567590	within coordinates
Tssr20880	transcription start site region 20880	1040 bp downstream
Tssr20881	transcription start site region 20881	1023 bp downstream
Tssr20882	transcription start site region 20882	500 bp downstream
Tssr20883	transcription start site region 20883	363 bp downstream
Tssr20884	transcription start site region 20884	348 bp downstream
Tssr26895	transcription start site region 26895	612 bp upstream
Tssr26896	transcription start site region 26896	572 bp upstream
Tssr26897	transcription start site region 26897	555 bp upstream
Tssr26898	transcription start site region 26898	466 bp upstream
Tssr26899	transcription start site region 26899	242 bp upstream