rs32945578 SNP Detail

Summary

• ID
  rs32945578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89417940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGTTCCG TTAGAAACGT
  CTTAGGTCCC TTCCCCTGTG TCGTCTCCAG CCTCTTTACA CACAGCTTTA GTCATACACA
  CATATATGCA CCCGCACACA TACATGTACG TGCACACACA TCTTGTTCCT TCTCCCGTCT
  CTATCTATTC ACAGTCTTGT CTTCCAAGAA GTGATGGGGG AGAGGTGGTA ACCGGGCATA
  R
  CTGGCCTCGT CCTCCTTATG CCTGTGCTGA GTCACCTATA CAGGCTCTGA ATGAGACAAT
  GTGGCTCCCA GAAGGCCACC CTGGAATTCA TGCACAGTGA CTTTTAGGGC CAGCATGCTT
  TCCTCTATGC CCTCTTCTGG AAGGTTCTGG GACATGAAGT CACTTGGTCC TGTCCAGCAG
  CTGGTGTCTC TGGTTAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46751126	NES10748032	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32945578					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46751126	NES10748032	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89417940 () rs orientation: forward

Symbol	Name	Function Class
Rr580122	regulatory region 580122	124 bp proximal
Rr580123	regulatory region 580123	348 bp proximal
Rr580124	regulatory region 580124	526 bp proximal
Rr580125	regulatory region 580125	1693 bp proximal
Rr580126	regulatory region 580126	1782 bp proximal