rs32940526 SNP Detail

Summary

• ID
  rs32940526
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89288339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGGACC AGATGGTTTG
  CTCGGGCCCC TTTGGTTTGA AGAAAAGCTT TCCGGGGTTT GCGGCTGCGA CGGGCAACAG
  GTCGAGGTGG CGGTGGCGGC GGCGGTAGGA GGGGCACCTG TGGAGGGCTG TCTTCACCGT
  TGGGCATTCC TGAGGTTGAG GCTGTGGTGG TGGCAGTGGC AAAAGCCTCC AGGTACTGTC
  K
  GGCTCGCTCA CAGTCATCCT CATCGGGGCT GGGGGCTTCC AGCCCACTGC CTTGTAGAAT
  CTCCATGCAA GCAGCGATGA CACACGGGAT TTCCAGTAGC CGAGCAGCTT GGAGTACAGC
  CGGCATATTG GCGCTGCTGG TGGTCAGTGT GGCTGTGTAA GCAAACTCGA GCAGGGCACC
  TAGGGCCTCT GGCCCTACAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749920	NES10734019	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32940526					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749920	NES10734019	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89288339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13426	CpG island 13426	1097 bp distal
Rr375330	regulatory region 375330	580 bp upstream
Rr580060	regulatory region 580060	1745 bp distal
Rr580062	regulatory region 580062	958 bp proximal
Tssr34125	transcription start site region 34125	1897 bp downstream
Tssr34126	transcription start site region 34126	1915 bp downstream
Tssr34127	transcription start site region 34127	1950 bp downstream
Zbtb7b	zinc finger and BTB domain containing 7B	Coding-Synonymous