rs32940524 SNP Detail

Summary

• ID
  rs32940524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89288154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCCATCT CCTCCTCTTC
  TTCCTCACCT TCAAAGACTT CATAGTTCAG GGGCCCCTCG GCAGGTGAGG CGGCACCTGT
  AGGAGGACTA TAGCTATCTC CGAGCCCACT GCCCCCACTG TTACCCAATC TACCAACCAT
  CTCTTCTTCT TCGTAGGTCA AGGGATGGGT GAGTACTGTG GGTGCCTCAG GGACCAGATG
  R
  TTTGCTCGGG CCCCTTTGGT TTGAAGAAAA GCTTTCCGGG GTTTGCGGCT GCGACGGGCA
  ACAGGTCGAG GTGGCGGTGG CGGCGGCGGT AGGAGGGGCA CCTGTGGAGG GCTGTCTTCA
  CCGTTGGGCA TTCCTGAGGT TGAGGCTGTG GTGGTGGCAG TGGCAAAAGC CTCCAGGTAC
  TGTCGGGCTC GCTCACAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749917	NES10734017	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32940524					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749917	NES10734017	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89288154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13426	CpG island 13426	912 bp distal
Rr375330	regulatory region 375330	765 bp upstream
Rr580060	regulatory region 580060	1560 bp distal
Rr580062	regulatory region 580062	1143 bp proximal
Zbtb7b	zinc finger and BTB domain containing 7B	Coding-Synonymous