rs32940373 SNP Detail

Summary

• ID
  rs32940373
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150649439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTATTT CTGTGTGTCA
  CAATGTTTGT GTTGGGACTT TGCATGCCAT AAGTCTCATT TAGAGGTCCG AGGACAATTT
  GCAGGTCCTA GGGATGGAAG TCCGGTTGTC AGGTTTAGAT GCAAGCCCCT TTCCATGCTA
  AGCCACATTG CCAGTCCTCA AAAATGCCCT TTTATGTTAT TGGGTTTTTG TTTGTTTTGT
  K
  TTTCAAGACA GGGTTTCTCT GTGTAACCTT GAGTGTCCTA GCAAAACGTC AATTTTAAGG
  AGTTTTACAT TAAGTCCTGA CTGTAGGATG CCCAGAAGCA TTTTACTGAT GGCCAGAGTT
  TTCCCATTCA GTGAGTTTTT AACTTCATGA CTAAATATAT TCTCTGGGTG AGGGCAACAG
  GGGAAGAGTT TGGGGAAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45715373	mCV23182709	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	T
ss148054945	ENSMUSSNP498597	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32940373					SNP	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150649439 () rs orientation: forward

Symbol	Name	Function Class
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	1199 bp upstream
Rr605335	regulatory region 605335	795 bp proximal
Tssr40414	transcription start site region 40414	1472 bp downstream
Tssr40415	transcription start site region 40415	1473 bp upstream
Tssr40416	transcription start site region 40416	1576 bp upstream
Tssr44743	transcription start site region 44743	1882 bp downstream