rs32939631 SNP Detail

Summary

• ID
  rs32939631
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89287357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCACTCA TAGGGCCGGT
  CCCCGGTGTG CAGGTGCATG TGGTTCTTGA GGTCGTAGCT ATGCAGGAAG CGGGCTGGGC
  AGTGGGGGCA CGAGTAGGGG CGTTCTCCTG TGTGCTTCCG CATGTGGATC TTCAGCTTGT
  CATTCCTAGT ACGAGCAGGG GAAAGGGCAG ACACTCAGGA TTCAGGATAG GATCCCCAGG
  S
  CATTTTAGCC ACGCCCCCGG GCCTTGACCC ACCCTTGTTC CTCACTGCGG TTTCCCCATT
  GCTGCCCCAG GAGACCCTTT TTGATTAGCC CTTAGCTCAA TGGGCCCTGG CACTATGAGC
  TCCTCTGCTT CCAGTTCAAT CTTCTTGGGA ACTAGCCCAC TCCCGAGCAT GCCCTTGTTT
  GCCTCTTTTG GCCTCCCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749914	NES10734015	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32939631					SNP	G	G	G	G	G	G	C	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749914	NES10734015	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89287357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13425	CpG island 13425	1278 bp distal
Cpgi13426	CpG island 13426	115 bp distal
Rr375330	regulatory region 375330	1562 bp upstream
Rr580060	regulatory region 580060	763 bp distal
Rr580061	regulatory region 580061	1559 bp distal
Rr580062	regulatory region 580062	1940 bp proximal
Zbtb7b	zinc finger and BTB domain containing 7B	Intron