rs32939629 SNP Detail

Summary

• ID
  rs32939629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89287314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCTGCAG GTGGTCCTCC
  TTGGCGAAGG CCTTGTGGCA CAGGTGGCAC TCATAGGGCC GGTCCCCGGT GTGCAGGTGC
  ATGTGGTTCT TGAGGTCGTA GCTATGCAGG AAGCGGGCTG GGCAGTGGGG GCACGAGTAG
  GGGCGTTCTC CTGTGTGCTT CCGCATGTGG ATCTTCAGCT TGTCATTCCT AGTACGAGCA
  R
  GGGAAAGGGC AGACACTCAG GATTCAGGAT AGGATCCCCA GGGCATTTTA GCCACGCCCC
  CGGGCCTTGA CCCACCCTTG TTCCTCACTG CGGTTTCCCC ATTGCTGCCC CAGGAGACCC
  TTTTTGATTA GCCCTTAGCT CAATGGGCCC TGGCACTATG AGCTCCTCTG CTTCCAGTTC
  AATCTTCTTG GGAACTAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749911	NES10734012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32939629					SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749911	NES10734012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89287314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13425	CpG island 13425	1235 bp distal
Cpgi13426	CpG island 13426	72 bp distal
Rr375330	regulatory region 375330	1605 bp upstream
Rr580060	regulatory region 580060	720 bp distal
Rr580061	regulatory region 580061	1516 bp distal
Rr580062	regulatory region 580062	1983 bp proximal
Zbtb7b	zinc finger and BTB domain containing 7B	Intron