rs32939178 SNP Detail

Summary

• ID
  rs32939178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89284668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTGGTAG TGCACGCCTT
  TAATCCCAGC ACTTGGGAGG CAGAGGCAGG CGGATCTGTG AGTTTGAGAC CAGTCTGGTC
  TACAGGGACA GGGCTACACA GAGAAACCCC GTCTCAACAA AACAGAGACA GAGTTATAAA
  AACAAAGAAG AGAGGAAAGG AAGAACTGGG ATGGATGCCA GAAGGGCGGC AGTTAGGGCC
  Y
  GAGCTGGGAC GGTGGCAGAG GTTACCCACC AGTGACTTTG AGTTTACTGG TCCTTCCTCT
  CCTCCCAGGA ACCAGGACAG AAAGCAGTGA CTTCAGAGGA AGCGTCCACA GCATCTCCCA
  GAAGCTCATC TGGCTTTGTG GGCCTCCCCT TTCTCCCAGA ACCCCAGGCA CCACTTCGGA
  AATCCCTGTC CCCAAACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46749899	NES10734096	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32939178					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749899	NES10734096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89284668 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dcst2	DC-STAMP domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr580060	regulatory region 580060			394 bp proximal
Rr580061	regulatory region 580061			1109 bp proximal
Zbtb7b	zinc finger and BTB domain containing 7B			285 bp downstream