rs32939175 SNP Detail

Summary

• ID
  rs32939175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89284649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGGTCC TCAGAGCACT
  AGGTGGTAGT GCACGCCTTT AATCCCAGCA CTTGGGAGGC AGAGGCAGGC GGATCTGTGA
  GTTTGAGACC AGTCTGGTCT ACAGGGACAG GGCTACACAG AGAAACCCCG TCTCAACAAA
  ACAGAGACAG AGTTATAAAA ACAAAGAAGA GAGGAAAGGA AGAACTGGGA TGGATGCCAG
  R
  AGGGCGGCAG TTAGGGCCCG AGCTGGGACG GTGGCAGAGG TTACCCACCA GTGACTTTGA
  GTTTACTGGT CCTTCCTCTC CTCCCAGGAA CCAGGACAGA AAGCAGTGAC TTCAGAGGAA
  GCGTCCACAG CATCTCCCAG AAGCTCATCT GGCTTTGTGG GCCTCCCCTT TCTCCCAGAA
  CCCCAGGCAC CACTTCGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749896	NES10734095	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32939175					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749896	NES10734095	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89284649 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13425	CpG island 13425			1104 bp proximal
Dcst2	DC-STAMP domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr580060	regulatory region 580060			413 bp proximal
Rr580061	regulatory region 580061			1128 bp proximal
Zbtb7b	zinc finger and BTB domain containing 7B			304 bp downstream