rs32938499 SNP Detail

Summary

• ID
  rs32938499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89284103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCTGCT CTGAGACTGA
  AGAGTGGAGA CCCTTCTAAA CAGACTGCAG ACTGCTCCAG CCTCAATTTC TCTAGGGAGT
  AGGAGGCAAG GACACCTGCT GAGACCCGAG AGGTGTCTGG GAGTGACATA GTTTTCAGAG
  TGGGTGGTAG AGAATGAAAT GTCTGCTGTG AGGAAGAGTG CAAAGAAACT GGCCCTGGGA
  R
  GCTGAGGGAC TTCCAGGTAG AGTTAAGGGG CAGGTGATAG TGAAGCCTTT GTTCTTAGTC
  AGAGGAGGTT TTTTTTTTTT TTTTTGCCTT TGGTGACAGG GCCTCAATAT TGTAGGCCAG
  GTTGGTTTGA AATGTATAGT GACTGTCCTC TCTCAGCTTT TGGAAGGCTG ATCCCATTGT
  TTTCCTCTTG TAAATATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46749890	NES10734183	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32938499					SNP	G	G	G	G	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749890	NES10734183	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89284103 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13425	CpG island 13425			1650 bp proximal
Dcst2	DC-STAMP domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr580060	regulatory region 580060			959 bp proximal
Rr580061	regulatory region 580061			1674 bp proximal
Zbtb7b	zinc finger and BTB domain containing 7B			850 bp downstream