rs32938287 SNP Detail

Summary

• ID
  rs32938287
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89294940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGTGAGG AGCAATGGGA
  GAGGCTGTTG GAGGTGGGAC CAGGAGAAGG AAGGGAGGGG AGGGGACAGA AGACAGCCTT
  GGCCAAATCG GGAGGAGGGG AACTCTGAAC ATTCAGTGCC AGGGGTGACA GGTGCCTAGG
  TCCCAGCCCC TCAGGGTATG TGGAACTAGG GGAACATAAA GAGACCCTCC AGACCCTAGT
  M
  AGCTCTTGCC CGTTCTGGGA GCTGTCCGGA TTCTCTTCAC CTTGTACCAG GCTGGGGCCC
  TCAGGGGCTG GGCAAGGCGG CACCCGCCCT CCTCATAGCC TCACCCCAAA CCCACTCACA
  TACCACAGTT CCTCGCCAGG GCGCCAGCCC TGCCAACCAG GCCAGGGGGC AGCACTCATG
  CCAGACCCCA GTGACCAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749974	NES10733836	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32938287					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749974	NES10733836	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89294940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580064	regulatory region 580064			1665 bp distal
Rr580065	regulatory region 580065			455 bp distal
Rr580066	regulatory region 580066			within coordinates
Rr580067	regulatory region 580067			264 bp proximal
Rr580068	regulatory region 580068			1529 bp proximal
Tssr30096	transcription start site region 30096			1696 bp upstream
Tssr34128	transcription start site region 34128			533 bp upstream
Tssr34129	transcription start site region 34129			485 bp upstream
Tssr34130	transcription start site region 34130			310 bp upstream
Tssr34131	transcription start site region 34131			279 bp upstream
Tssr34132	transcription start site region 34132			247 bp downstream
Zbtb7b	zinc finger and BTB domain containing 7B			Intron
				mRNA-UTR