rs32938285 SNP Detail

Summary

• ID
  rs32938285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89294218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCGCTTAG CCGCAGGCAG
  AAACCTGAGC CCCCCCCAAG CCCCAGAAGA CACCCCAGCC GGGTCCCCGG AGCCCAGCTC
  CCTGCCAGCC TGTCCAACCT CCTGGCCTGG CCCAGCAAGC ACAGCTTCCG TAGGACCCTT
  CTTCTGCCTT TCTTGGTCCT CTTGGATCCC TTAGACTCTG AAGCCTTCCC CTCACTCCAA
  Y
  ACCTCAGCTC CTCTGTTCCC TAAAGCCTCC AATGAAATCT GGGCACCCTC TTCCTAGCCT
  GTTTTCAGTC CTCCTCTAAC CCCTGGCCAA TTCTAGGCCT CCGAGCCTCC CCTGGGGCCT
  GACCTCCTGA GCCAGAGCTG GGCCTACTCA CCTGAACGCT GAGGGGCCTT GCCGGCAACT
  CCTCCTGGCC CCTGGGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749971	NES10733834	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32938285					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749971	NES10733834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89294218 () rs orientation: forward

Symbol	Name	Function Class
Rr580064	regulatory region 580064	943 bp distal
Rr580065	regulatory region 580065	within coordinates
Rr580066	regulatory region 580066	268 bp proximal
Rr580067	regulatory region 580067	986 bp proximal
Tssr34128	transcription start site region 34128	171 bp downstream
Tssr34129	transcription start site region 34129	221 bp downstream
Tssr34130	transcription start site region 34130	401 bp downstream
Tssr34131	transcription start site region 34131	432 bp downstream
Tssr34132	transcription start site region 34132	969 bp downstream
Zbtb7b	zinc finger and BTB domain containing 7B	Intron