rs32936747 SNP Detail

Summary

• ID
  rs32936747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89293309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACACCA CAGCTGGCCC
  CTTGTAGTTT CCTTCTGTAA CATCAGGTCT AGCACACAGC TCTTTAGCCC ATCAAGGAGA
  ATGGAACAAG ATAAAGATGG CGGAGAAAGG AGCGGGGGGC ACCTCTTTTC CAGTCTTCCC
  TCGCCCCCTC TGGGGGCTCA TCAGCTGCCC TTTACTTCTG CCCTTTACTT CTGGGCTTTC
  R
  TTTGGACTTT TCTTCTTCTT TCTACCCTTT CCTACCTTCT GTGGGCCTTG TCTTCCCAGC
  AGGAGATTGA ACCTTGGTTC CCTTCCTTAG CCCTTATGGG TGTCCCACCA TATGACCTCT
  CCACCGTGCC TGTCCCTGGG ACTTCTGCTA GGAAGCGCTG CCACACAGGG TTTCTCTCCT
  TCTTCCTATT ACTTCTCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749953	NES10733825	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32936747					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749953	NES10733825	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89293309 () rs orientation: forward

Symbol	Name	Function Class
Rr580063	regulatory region 580063	1984 bp distal
Rr580064	regulatory region 580064	34 bp distal
Rr580065	regulatory region 580065	818 bp proximal
Rr580066	regulatory region 580066	1177 bp proximal
Rr580067	regulatory region 580067	1895 bp proximal
Tssr34128	transcription start site region 34128	1080 bp downstream
Tssr34129	transcription start site region 34129	1130 bp downstream
Tssr34130	transcription start site region 34130	1310 bp downstream
Tssr34131	transcription start site region 34131	1341 bp downstream
Tssr34132	transcription start site region 34132	1878 bp downstream
Zbtb7b	zinc finger and BTB domain containing 7B	Intron