rs32936603 SNP Detail

Summary

• ID
  rs32936603
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119449243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG AGCCGCTCTG TTTTGAGTTG
  K
  GTGGCTGTTT TTCTGGGAAT CACCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45215027	mCV22553835	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss147337147	ENSMUSSNP6862296	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320476341	CHEV_2_119444498	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32936603					SNP	G	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119449243 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12123	CpG island 12123			within coordinates
Nusap1	nucleolar and spindle associated protein 1			mRNA-UTR
				Noncoding-Transcript-Variant
Oip5	Opa interacting protein 5			293 bp upstream
Rr397233	regulatory region 397233			6 bp downstream
Rr563550	regulatory region 563550			454 bp distal
Rr563551	regulatory region 563551			453 bp distal
Rr563552	regulatory region 563552			35 bp distal
Rr563553	regulatory region 563553			1200 bp proximal
Tssr19645	transcription start site region 19645			25 bp downstream
Tssr25824	transcription start site region 25824			252 bp upstream