rs32935663 SNP Detail

Summary

• ID
  rs32935663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89293055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCAAGA CACTTACGGA
  GCCCTCCCCT CCAGGTCCTC TAAACTTCTA CGAGCCTTCC CCATCCCCCA TGTGGCGCTT
  CCCCCCTCCT AACCTCACCA CCCCCAGCAC TCACACTTCC TGGGGGCCGA GGCGGGGAAG
  AGAGACCGCA AGCCACGAAG GGGGAAGGAG GCGAGGGGAG CTGGTTGCTT CCCGGTGCCG
  Y
  GGGGGTTAAG CTCCCACCAA GTCCCCCGAT CCTGGTGCAG GGGCTCCAGA CTGAGGGACA
  CCACAGCTGG CCCCTTGTAG TTTCCTTCTG TAACATCAGG TCTAGCACAC AGCTCTTTAG
  CCCATCAAGG AGAATGGAAC AAGATAAAGA TGGCGGAGAA AGGAGCGGGG GGCACCTCTT
  TTCCAGTCTT CCCTCGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749947	NES10733819	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32935663					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749947	NES10733819	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89293055 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr375330	regulatory region 375330			1887 bp downstream
Rr580063	regulatory region 580063			1730 bp distal
Rr580064	regulatory region 580064			within coordinates
Rr580065	regulatory region 580065			1072 bp proximal
Rr580066	regulatory region 580066			1431 bp proximal
Tssr34128	transcription start site region 34128			1334 bp downstream
Tssr34129	transcription start site region 34129			1384 bp downstream
Tssr34130	transcription start site region 34130			1564 bp downstream
Tssr34131	transcription start site region 34131			1595 bp downstream
Zbtb7b	zinc finger and BTB domain containing 7B			Intron
				mRNA-UTR