rs32935661 SNP Detail

Summary

• ID
  rs32935661
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89292592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGGAGC AGCAGCTTGG
  AGGGTGAGAG GGTGAGGGCC AGGCTGAAAC ACCTTCCTGC TAGGGATGAC TGAGACCCAA
  GGCACTGCCC AGTGCTCCTG GTGCCTGGGC TGGTCACCCC TCCCCCTTCT TTCTCCTTTC
  TGCCCCCACC CCGGCTCCAG CCTCAGGTTC TCTTCCTGTT TTTTTGGAAC CCAGTTTGCA
  M
  GAAGCTAGCT AGGGCTTTGG CCTGTGGCTG GACCAGAGGG GCAGGGAAAC TGGACAGCCA
  ATCCAAAGTC CTCAGGGACC CAGGAATCCT TAGTCCATGG TTCCTTCCGT CCTTTCTCAA
  GATTCTCAAG ACTTACGGGG TCAAAGAAGC ACAGATATCT GAATTACTCA GTTTCAGGCA
  GGTGAGGTTC TGAGCCACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749944	NES10733817	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32935661					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749944	NES10733817	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89292592 () rs orientation: forward

Symbol	Name	Function Class
Rr375330	regulatory region 375330	1424 bp downstream
Rr580063	regulatory region 580063	1267 bp distal
Rr580064	regulatory region 580064	within coordinates
Rr580065	regulatory region 580065	1535 bp proximal
Rr580066	regulatory region 580066	1894 bp proximal
Tssr34128	transcription start site region 34128	1797 bp downstream
Tssr34129	transcription start site region 34129	1847 bp downstream
Zbtb7b	zinc finger and BTB domain containing 7B	Intron