rs32935659 SNP Detail

Summary

• ID
  rs32935659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89292410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCCCCC TTCTCCCCAC
  CTTGGGGATT AGGGACTGAG GCTTAGTGTG GGGGGCAGCC GGCAGAAGCA GGATTAGTGG
  CGTAAAAAAT AGATGTGGGC GCACAGAGCA CCCCCCCCCC CCCATTCCAA GGCCCCTTCT
  CCCAGCTCCG CCAGGGAGCC AGAGAGGTGC CTGGTCCTGT TTTTTCTGGA GCAGCAGCTT
  R
  GAGGGTGAGA GGGTGAGGGC CAGGCTGAAA CACCTTCCTG CTAGGGATGA CTGAGACCCA
  AGGCACTGCC CAGTGCTCCT GGTGCCTGGG CTGGTCACCC CTCCCCCTTC TTTCTCCTTT
  CTGCCCCCAC CCCGGCTCCA GCCTCAGGTT CTCTTCCTGT TTTTTTGGAA CCCAGTTTGC
  ACGAAGCTAG CTAGGGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749941	NES10733815	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32935659					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749941	NES10733815	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89292410 () rs orientation: forward

Symbol	Name	Function Class
Rr375330	regulatory region 375330	1242 bp downstream
Rr580063	regulatory region 580063	1085 bp distal
Rr580064	regulatory region 580064	73 bp proximal
Rr580065	regulatory region 580065	1717 bp proximal
Tssr34128	transcription start site region 34128	1979 bp downstream
Zbtb7b	zinc finger and BTB domain containing 7B	Intron