rs32935131 SNP Detail

Summary

• ID
  rs32935131
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89209683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGGTTA AGGCTGAACT
  CCTGCTCCAC GTGCCTTTAT GATTTAATTG CTGTGTGAGC CACCATGCCC AGCTTCCAGG
  ACATTGTGTG TTGAGGGGAT AGGCGTGTGT GTGTGTGTGT GTGTGTGTGC GCGCGCGCAC
  GTGCTTGTGT GTGTCAGGCT TCCTAGAAGC CACTACACCC TGCTTATGAT TTGTTTTCTC
  K
  TCTTCTCCTT CTCCTCCTTC TCCTTTTTCT TCTTCTTTAA TAACAGGGTT TCTCAAGCCG
  GGCGTGGTGG TGCACACCTT TAATCCCAGC ACTTGGGAGG CAGAGGCAGG TGGATTTCTG
  AGTAGAGGCC AGCCTGGTCT ACAGAGCGAG TTTCAGGACA GCCAGGGCTA CACAGAGAAA
  CCCTGTTTTT TTTGTTTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749599	NES10736703	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32935131					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749599	NES10736703	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89209683 () rs orientation: forward

Symbol	Name	Function Class
Gm22642	predicted gene, 22642	102 bp upstream
Gm33845	predicted gene, 33845	within coordinates
Gm34014	predicted gene, 34014	664 bp upstream
Gm65883	predicted gene, 65883	within coordinates
Rr580029	regulatory region 580029	1628 bp distal
Rr580030	regulatory region 580030	1644 bp distal
Rr580031	regulatory region 580031	1796 bp proximal
Tssr30089	transcription start site region 30089	486 bp upstream
Tssr30090	transcription start site region 30090	511 bp upstream