rs32935129 SNP Detail

Summary

• ID
  rs32935129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89208845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTATTT ATTTTATATA
  TATGGTGAGT ACACTGTAGC TATCTTCAGA CACACCAGAA GAGGGCATCA GATCCCATTA
  CAGTTGCTGA GAATTGAACT CAAAACCTCT GGAAGAGCAG TCAGTGCTCT TAACCGCTGA
  GCCATCTCTC CAGCCCAAGA TGCTGTCTCA AAAGAACAAA AAGTAAGAAG GGTTGGTCTG
  R
  TACATGTGAG TATTTGAGGC CCTGGACTCA TCCCCCTATC TCAGTCTCTA CTCCCCTCCC
  ACCTCAATAC ACTGTACAAA AGAGTATACA TGGGGCTGGA AAGAGAGCTC AGTGGTTAGA
  GCACCTGCTG TTCTTACAAA GGACCTGGTT TTGATTCCTA GCACCCACAT GATAGTTCAC
  AATCATCTGT AACTCCAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749596	NES10736741	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32935129					SNP	A	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749596	NES10736741	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89208845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13418	CpG island 13418	1546 bp distal
Gm22642	predicted gene, 22642	940 bp upstream
Gm33845	predicted gene, 33845	within coordinates
Gm34014	predicted gene, 34014	1502 bp upstream
Gm65883	predicted gene, 65883	within coordinates
Rr580029	regulatory region 580029	790 bp distal
Rr580030	regulatory region 580030	806 bp distal
Tssr30089	transcription start site region 30089	1324 bp upstream
Tssr30090	transcription start site region 30090	1349 bp upstream