rs32934943 SNP Detail

Summary

• ID
  rs32934943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89290679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCTTGGAC AAGTCACTTC CTTTCAGAGG CCTATTCCTC
  CTGGACTGTA ATGTGAAAGG CTAGTCCAGA CAATCCTTCC GTCAGTTTGG TTGATCAACC
  Y
  TGGCCACCTA TGGGAAAGAG TTTTGGGGGG GCGGGGGTGT AAGTCAGGGG CTACTTATTT
  CCTCTTTAGG ATACAACACT GCCACGGTTG CCTGCCTGCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749932	NES10733808	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32934943					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749932	NES10733808	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89290679 () rs orientation: forward

Symbol	Name	Function Class
Rr375330	regulatory region 375330	within coordinates
Rr580062	regulatory region 580062	750 bp distal
Rr580063	regulatory region 580063	80 bp proximal
Rr580064	regulatory region 580064	1804 bp proximal
Tssr34125	transcription start site region 34125	435 bp upstream
Tssr34126	transcription start site region 34126	412 bp upstream
Tssr34127	transcription start site region 34127	382 bp upstream
Zbtb7b	zinc finger and BTB domain containing 7B	Intron