rs32934258 SNP Detail

Summary

• ID
  rs32934258
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89207007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTCTCTG AGGGGAGGAA
  GGGAAGGAAT GCAGCCCAGG AAGACCAAGG CAGCTCTAGT TTGCAGCACA GAGTCCTAGA
  CAGGAGTTGT ACAGAGAAGG GACTTTGGAA ACTGGTACAG CGTCCCTCAG GTCTTCAGCT
  TCGGATGAGT AACACAGCCT GCGGGGAAGC CAGTCTCGTT TGCTAAGAAC TGTGGGAGAA
  M
  GAAAGCAGAG CTCTCACCAG GGCCACCAAT CCCTCGTCAT CCCACAAGCC ACCGCGGAAA
  GGCAGTCTTG CCTTGACTAC TCTTGGCTGG TTCCAGATGC ATAACCTCTA AACTTCAAAG
  CCTTTGTAAA ACCGGAGGGG GCGCTTGCAG AGACAGTCTG AGAAAAGCGC TTTTTCTTCC
  CGATGCTGAC GCATCCGCGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46749581	NES10736892	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32934258					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749581	NES10736892	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89207007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13418	CpG island 13418	7 bp proximal
Gm33845	predicted gene, 33845	within coordinates
Gm65883	predicted gene, 65883	within coordinates
Rr580029	regulatory region 580029	within coordinates
Rr580030	regulatory region 580030	1011 bp proximal