AGAGATCTCT CTGACTCTGC CTCTAGTGCT GGGGTTAAAG GTGTATATCC CCATGCCAGG CAGGACGTAC GTTTTCAAGC AGGTTCCTCA CAGGGTTCTA GACTGCTCCT ACTTTTCCGT TGCTCTTTTG ACCGCCTTCT GATTGACCCT CTTCCTGTCT CCCCAGTTCT CCTCTGCTTG CTGTTGGCGC TCTTTGCCTC Y GGCCTCATCC ACCGAGTTTG TGTCACCACT TGGTACGTAT CTGACAGCTG GGCAAGCGGT GCAACAACAC CATGTCTTGT GGGACCAGAT CTTCCTATGG TGTTAATAGT CCCTTCCCTT CCCACCATAT GCCACCTCCT CTGTCCCCTC CCCCCCATTA TTTTTTTCAA AGCTTTTTTT ATTTATTATA TGTAACTACA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46749221 | NES10739016 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | T | C | C | C | C | C | C |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs32934165 | SNP | C | C | C | C | C | C | T | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46749221 | NES10739016 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:89156415 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Krtcap2 | keratinocyte associated protein 2 | Coding-Synonymous | ||||||
Rr580001 | regulatory region 580001 | 1145 bp proximal | ||||||
Rr580002 | regulatory region 580002 | 1226 bp proximal | ||||||
Rr580003 | regulatory region 580003 | 1443 bp proximal | ||||||
Rr580004 | regulatory region 580004 | 1487 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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