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rs32934165 SNP Detail
Summary
  • ID
    rs32934165
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:89156415 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAGATCTCT CTGACTCTGC
    CTCTAGTGCT GGGGTTAAAG GTGTATATCC CCATGCCAGG CAGGACGTAC GTTTTCAAGC
    AGGTTCCTCA CAGGGTTCTA GACTGCTCCT ACTTTTCCGT TGCTCTTTTG ACCGCCTTCT
    GATTGACCCT CTTCCTGTCT CCCCAGTTCT CCTCTGCTTG CTGTTGGCGC TCTTTGCCTC
    Y
    GGCCTCATCC ACCGAGTTTG TGTCACCACT TGGTACGTAT CTGACAGCTG GGCAAGCGGT
    GCAACAACAC CATGTCTTGT GGGACCAGAT CTTCCTATGG TGTTAATAGT CCCTTCCCTT
    CCCACCATAT GCCACCTCCT CTGTCCCCTC CCCCCCATTA TTTTTTTCAA AGCTTTTTTT
    ATTTATTATA TGTAACTACA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46749221 NES10739016 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs32934165 SNP C C C C C C T C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46749221 NES10739016 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:89156415 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Krtcap2 keratinocyte associated protein 2 Coding-Synonymous
Rr580001 regulatory region 580001 1145 bp proximal
Rr580002 regulatory region 580002 1226 bp proximal
Rr580003 regulatory region 580003 1443 bp proximal
Rr580004 regulatory region 580004 1487 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory