rs32934165 SNP Detail

Summary

• ID
  rs32934165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89156415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATCTCT CTGACTCTGC
  CTCTAGTGCT GGGGTTAAAG GTGTATATCC CCATGCCAGG CAGGACGTAC GTTTTCAAGC
  AGGTTCCTCA CAGGGTTCTA GACTGCTCCT ACTTTTCCGT TGCTCTTTTG ACCGCCTTCT
  GATTGACCCT CTTCCTGTCT CCCCAGTTCT CCTCTGCTTG CTGTTGGCGC TCTTTGCCTC
  Y
  GGCCTCATCC ACCGAGTTTG TGTCACCACT TGGTACGTAT CTGACAGCTG GGCAAGCGGT
  GCAACAACAC CATGTCTTGT GGGACCAGAT CTTCCTATGG TGTTAATAGT CCCTTCCCTT
  CCCACCATAT GCCACCTCCT CTGTCCCCTC CCCCCCATTA TTTTTTTCAA AGCTTTTTTT
  ATTTATTATA TGTAACTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46749221	NES10739016	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32934165					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749221	NES10739016	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89156415 () rs orientation: forward

Symbol	Name	Function Class
Krtcap2	keratinocyte associated protein 2	Coding-Synonymous
Rr580001	regulatory region 580001	1145 bp proximal
Rr580002	regulatory region 580002	1226 bp proximal
Rr580003	regulatory region 580003	1443 bp proximal
Rr580004	regulatory region 580004	1487 bp proximal