rs32933869 SNP Detail

Summary

• ID
  rs32933869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89160813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAGAGGGG GCCTCCAGGG CAAGAGGCAG AGGTCAGGGG
  AACTTAGGGG AACTGGAGAG CAAAAATACT GACCCAGGCT CAGCAGAGAA GGGCTGTATT
  Y
  TCTGTGTCTA GGTAAACTGC CCTGAGCACT GCCCTCAAGC ACTTTGAAAG GATTTCTGGG
  GCTTGGGTGT GTGCATCCAC CTGTGTGGGG AGACTAGGGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46749281	NES10738801	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32933869					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749281	NES10738801	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89160813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13414	CpG island 13414	1834 bp distal
Rr367466	regulatory region 367466	1910 bp downstream
Rr580002	regulatory region 580002	1371 bp distal
Rr580006	regulatory region 580006	471 bp proximal
Rr580007	regulatory region 580007	1483 bp proximal
Rr580008	regulatory region 580008	1537 bp proximal
Rr580009	regulatory region 580009	1924 bp proximal