rs32933412 SNP Detail

Summary

• ID
  rs32933412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89156300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTTATT AAGGCATACC
  TATTTTGTTT GTGTTGTTTT TCTAGTCAGG ATTTCTCTGT GTAGCCCTGG CTGTCCTGGA
  ACTCCCTCTG TAGAGGAAGC TGACCTCCAG CTCACAGAGA TCTCTCTGAC TCTGCCTCTA
  GTGCTGGGGT TAAAGGTGTA TATCCCCATG CCAGGCAGGA CGTACGTTTT CAAGCAGGTT
  Y
  CTCACAGGGT TCTAGACTGC TCCTACTTTT CCGTTGCTCT TTTGACCGCC TTCTGATTGA
  CCCTCTTCCT GTCTCCCCAG TTCTCCTCTG CTTGCTGTTG GCGCTCTTTG CCTCCGGCCT
  CATCCACCGA GTTTGTGTCA CCACTTGGTA CGTATCTGAC AGCTGGGCAA GCGGTGCAAC
  AACACCATGT CTTGTGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749218	NES10739014	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		C	C	T	C
ss135474290	ENSMUSSNP5988400	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32933412					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749218	NES10739014	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89156300 () rs orientation: forward

Symbol	Name	Function Class
Krtcap2	keratinocyte associated protein 2	Intron
Rr580001	regulatory region 580001	1260 bp proximal
Rr580002	regulatory region 580002	1341 bp proximal
Rr580003	regulatory region 580003	1558 bp proximal
Rr580004	regulatory region 580004	1602 bp proximal