rs32933409 SNP Detail

Summary

• ID
  rs32933409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89155959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACACGC CTGCTTTCCG
  CCCTTCTAGA ACATTTTATT TATTGATTTA CTTTTGAGGC GGGATCTCAC TATGTTGCCC
  AGGCTGGCCT TCCCACTGTG TAGCCCAGGC TGTCCCTCCC TTGGATTCCT GGGCTTACGT
  GATGCTTCCT GCCTTATCCT CCGGACTGGC TTGCTGTGTA GGCATATACC ACTGCGTTTT
  Y
  GCTTTCTTCT GTGTATGTTC GGGGGTTGGG GGACCAGGAA GTTAAATGAA ACGTGGAGCC
  AAGCTAGTCA AACAAAACGC CATTCATATC TTCCCTTGGT GTCCTGAACA AGTGTTCAGG
  CACAAGGCAT TTGAAATCCC TGCTTTTATT AAGGCATACC TATTTTGTTT GTGTTGTTTT
  TCTAGTCAGG ATTTCTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46749215	NES10739050	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32933409					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749215	NES10739050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89155959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13413	CpG island 13413	1728 bp distal
Krtcap2	keratinocyte associated protein 2	Intron
Rr580001	regulatory region 580001	1601 bp proximal
Rr580002	regulatory region 580002	1682 bp proximal
Rr580003	regulatory region 580003	1899 bp proximal
Rr580004	regulatory region 580004	1943 bp proximal