rs32933180 SNP Detail

Summary

• ID
  rs32933180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89160429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCTGGA TTTTTGGGAT
  ATGAACTCCT GTCCTCACCT GGCCCTTTCT CCACTGACCC ATCTTCCCCA GCCCAACATG
  AACAGTTAGT TAGCATGGTG TGGCAAGTGT GCTAGCCACA CAGTCTGTAT AGGACTCAGA
  AATTCTGATG ATAAACTAAG ATTCTATTAT GTCCCTTCAA GGTCTGTGGC AACGGGCACA
  Y
  GGGATTTGCT GGGCTATTCT GTGTTATGTA TATTTGAAAA CTCAAAAGTA AAAGTTCAAT
  CTTTTTTTTA TGGCCAATTC CTGTTTTCCT AGAGGATCTG ACTCCAGCTA CACTGGGGGA
  CAACACCAGA AACTTTAAAT TAGAGCCATC ACCACCACCA CCACCCCACC CCACCACACC
  CCCGAAGCAA TAAAGTCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46749272	NES10738793	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32933180					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749272	NES10738793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89160429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13414	CpG island 13414	1450 bp distal
Rr367466	regulatory region 367466	1526 bp downstream
Rr580002	regulatory region 580002	987 bp distal
Rr580005	regulatory region 580005	1636 bp distal
Rr580006	regulatory region 580006	855 bp proximal
Rr580007	regulatory region 580007	1867 bp proximal
Rr580008	regulatory region 580008	1921 bp proximal