CACAAAGGAA AGGGTTCTGT GAGAAGGATA CACTGAAATC TATTGTGAAG GCACTGGGTG GTGGGCTCTG TGGGAACCTT GGTAGAATGG GAAGTTGGCA R CCCTGCCTTC TTTGGGGGAC TGCTGGAGTC TACAGTCCTT GACAGGTTAC AAATAGTGCT ACCTCCTAAG CAAACAATGC TCAGAGCCCT AAGGCAGACA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46749260 | NES10738867 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
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rs32932528 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46749260 | NES10738867 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:89159353 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13414 | CpG island 13414 | 374 bp distal | ||||||
Rr367466 | regulatory region 367466 | 450 bp downstream | ||||||
Rr580001 | regulatory region 580001 | 1772 bp distal | ||||||
Rr580002 | regulatory region 580002 | within coordinates | ||||||
Rr580003 | regulatory region 580003 | 1474 bp distal | ||||||
Rr580004 | regulatory region 580004 | 1430 bp distal | ||||||
Rr580005 | regulatory region 580005 | 560 bp distal | ||||||
Rr580006 | regulatory region 580006 | 1931 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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