rs32932525 SNP Detail

Summary

• ID
  rs32932525
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89159303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCCTTGG TGAGAACCGG
  ACACTGTCCT GTTCCCACTG CCCCCTGCCT CCACAGCTCT GCTCCCCAGG GCCTGGGGAA
  GGATGTTGGG AAACAAGAGA GAGGCAGAGA CCCATAGAGA CAGAGAAGCT GAGAGACACA
  GAGACAGAGG CACAAAGGAA AGGGTTCTGT GAGAAGGATA CACTGAAATC TATTGTGAAG
  K
  CACTGGGTGG TGGGCTCTGT GGGAACCTTG GTAGAATGGG AAGTTGGCAG CCCTGCCTTC
  TTTGGGGGAC TGCTGGAGTC TACAGTCCTT GACAGGTTAC AAATAGTGCT ACCTCCTAAG
  CAAACAATGC TCAGAGCCCT AAGGCAGACA GCCGGGGCAC TTAATTGTCC CCTATAGGTA
  CATTTCTTGG CTTCCCTTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46749257	NES10738865	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs32932525					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749257	NES10738865	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89159303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13414	CpG island 13414	324 bp distal
Rr367466	regulatory region 367466	400 bp downstream
Rr580001	regulatory region 580001	1722 bp distal
Rr580002	regulatory region 580002	within coordinates
Rr580003	regulatory region 580003	1424 bp distal
Rr580004	regulatory region 580004	1380 bp distal
Rr580005	regulatory region 580005	510 bp distal
Rr580006	regulatory region 580006	1981 bp proximal