rs32932060 SNP Detail

Summary

• ID
  rs32932060
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89179940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTGGGG CTGCCCCTTA
  GTCCCATTCC AATCCATAAG CCAGGGCAAG CGTACACCCT CACTGAGATT GCAGCAGCAG
  CAGTGGTAGG AGCAATACTG CCCAGACCAG TGGGAAGAGG CGGGGGGCGG CACTGTAACC
  AATGCTGTGC AAAACCTGTA CTTCCGGGTC ATCTGCAAGG TGAGAAGGCA AAGACAGACA
  W
  GGTAAGTGTT TGCATCGGCT TCCAGCCACA CAGGATTTAG CCAGCCCGTA TGTGGCTAGG
  GAGCCACCTT ACTCCTCAGT CTCTTTAAGC AAACCCCTTC CTGTGACCCA GACCAAACTG
  TCTCAGGCTA CTACCTACCT GCTTGGAGTC TCTTCTCCTG TGGGTTGACA TGGGCCTGGG
  GATTATGAGC TGAAAAATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46749350	NES10737984	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs32932060					SNP	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749350	NES10737984	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89179940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13416	CpG island 13416	1539 bp distal
Efna1	ephrin A1	Intron
Rr580015	regulatory region 580015	1573 bp distal
Rr580016	regulatory region 580016	2000 bp distal
Rr580017	regulatory region 580017	596 bp distal
Tssr30087	transcription start site region 30087	725 bp downstream