rs32932057 SNP Detail

Summary

• ID
  rs32932057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89179026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTACATTT CCAGCCTTTT
  ATTTTTGAGT TTGAGGCAAG GTCTGAGTTA CTCATGCAGT CTCAAGTTTT TAACCTTCCC
  ACCTCAGCCG CAAAAGGAGC TCTGCATTAT ACCTGCCCCC CCCCACACCC CCCCCCCATT
  GCTTCTGTTT AGCACAGAGC CTAACACACA ATGGGGACAC TGGTCACAAA TCAACATGGT
  R
  GGGCAGAAAA GCATGTCCAT AAAAAACCAT CAATTTATTA TGAATCCAAA AACACTGTAT
  AAAAAAACCC TGCAGTCATA GAAATGAACA GATACAGCAC ATTTATATAC AGACACTGTA
  CATGTGGGCC CTGCCCGTTA AGCTAAACTC CACAGACTGT ACACACGGGC ACTGCCCTTA
  CAGCTACACT CTAAAACCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46749347	NES10737981	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs32932057					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749347	NES10737981	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89179026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13416	CpG island 13416	625 bp distal
Efna1	ephrin A1	11 bp downstream
Rr580015	regulatory region 580015	659 bp distal
Rr580016	regulatory region 580016	1086 bp distal
Rr580017	regulatory region 580017	153 bp proximal
Slc50a1	solute carrier family 50 (sugar transporter), member 1	1149 bp upstream
Tssr30087	transcription start site region 30087	188 bp upstream
Tssr34108	transcription start site region 34108	1231 bp upstream
Tssr34109	transcription start site region 34109	1168 bp upstream