rs32932055 SNP Detail

Summary

• ID
  rs32932055
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89178567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAGGCG GCTCTGCTGG
  TGGGGCAGCG CACATGCTTC AGCTGGCATC CAGCTCCCTG ACTCACCCAG ACAGCATGAG
  TACCTGCATG GTGTGCCAAA GCCCAGCGCT CGAGGCTGGT GAAGTTGGAC AGGAAGAACA
  AAGAGTGGGT GCGGAGAGGA ATCTATAGCC CACTCTTGCA GGGAGTTGTG CAGAACCCTC
  M
  GGAGTAAACT CCTTTAGCCT GGTAAGACTG ATCCTAGCCA TTTATTTATT TTGTCTTTTA
  TTTACTTTTT TTGTTTTGTT TTGGTGAGAC AAAGTCTCAC ACTGTAGCCC AGGCTGGCAT
  TGGAATTTTG GCAACATTGC TTCAACCTTC TGAGTGCTGG GGTCACAGGC AGGAGCCACC
  ATGCCTGGCT ACTTATGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ
ss46749344	NES10738100	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ
rs32932055					SNP	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749344	NES10738100	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89178567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13416	CpG island 13416	166 bp distal
Efna1	ephrin A1	470 bp downstream
Rr580014	regulatory region 580014	1970 bp distal
Rr580015	regulatory region 580015	200 bp distal
Rr580016	regulatory region 580016	627 bp distal
Rr580017	regulatory region 580017	612 bp proximal
Slc50a1	solute carrier family 50 (sugar transporter), member 1	690 bp upstream
Tssr30087	transcription start site region 30087	647 bp upstream
Tssr34108	transcription start site region 34108	772 bp upstream
Tssr34109	transcription start site region 34109	709 bp upstream