rs32931784 SNP Detail

Summary

• ID
  rs32931784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89157760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATGAAAAA ACTTATCCTT CAACCCTTCT AGGACAAAAT
  CCTACACATT TAGAGGCACC TAAAGGTTAG GGAATAAGGC TCAGTAAAGA TGAAGCCAAG
  Y
  GTCTAAGGAG GTCTGGTGAA GGATTATTAA GAGGCCACAC TGCCCAGTCA ATCACTCTTT
  ACCTGGCCCA GGAGGAGGAA CTGCACAGTT TGCATAAAGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46749245	NES10738950	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32931784					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749245	NES10738950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89157760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13414	CpG island 13414	986 bp proximal
Krtcap2	keratinocyte associated protein 2	724 bp downstream
Rr367466	regulatory region 367466	842 bp upstream
Rr580001	regulatory region 580001	179 bp distal
Rr580002	regulatory region 580002	within coordinates
Rr580003	regulatory region 580003	98 bp proximal
Rr580004	regulatory region 580004	142 bp proximal
Rr580005	regulatory region 580005	1012 bp proximal