rs32931412 SNP Detail

Summary

• ID
  rs32931412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89178489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCCCTA TCCAAGGACA
  AGCCTACCCC TGGCCCCCTG TTCCAACATA CTTGCTGCTG GGAACTTTCC CTCCCAGCCT
  CCCAGGCGGC TCTGCTGGTG GGGCAGCGCA CATGCTTCAG CTGGCATCCA GCTCCCTGAC
  TCACCCAGAC AGCATGAGTA CCTGCATGGT GTGCCAAAGC CCAGCGCTCG AGGCTGGTGA
  R
  GTTGGACAGG AAGAACAAAG AGTGGGTGCG GAGAGGAATC TATAGCCCAC TCTTGCAGGG
  AGTTGTGCAG AACCCTCAGG AGTAAACTCC TTTAGCCTGG TAAGACTGAT CCTAGCCATT
  TATTTATTTT GTCTTTTATT TACTTTTTTT GTTTTGTTTT GGTGAGACAA AGTCTCACAC
  TGTAGCCCAG GCTGGCATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46749341	NES10738099	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32931412					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749341	NES10738099	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89178489 () rs orientation: forward

Symbol	Name	Function Class
Efna1	ephrin A1	548 bp downstream
Rr580014	regulatory region 580014	1892 bp distal
Rr580015	regulatory region 580015	122 bp distal
Rr580016	regulatory region 580016	549 bp distal
Rr580017	regulatory region 580017	690 bp proximal
Slc50a1	solute carrier family 50 (sugar transporter), member 1	612 bp upstream
Tssr30087	transcription start site region 30087	725 bp upstream
Tssr34108	transcription start site region 34108	694 bp upstream
Tssr34109	transcription start site region 34109	631 bp upstream