rs32931410 SNP Detail

Summary

• ID
  rs32931410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89177980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCGGTTC CCTAGCCCAG
  CGCGGAGTTC CAGTAGCTCA GACCCGGAGC TGCGGAAGGC GAAGCTCCGC CCTTCCCCGT
  GGAACCGCGC CGGAACCCGC CCTCGCCCGA ACTTCACCGG AACTGGGGAC CCAGCCAAAC
  CAGCGCCGCG TGCTGGCCGG GTGGTTTGCT GTAATGTGCG GGCCTGGGTC CTGATCGTGC
  Y
  GTTCAGATTG CGTTTAGTGG TTTTAGTAGT GCCCCTGCAT TTGTCCCCGA TCCGACCCCT
  CCTCACACTG CGCACCCCTT GCATCATCGA GACCACTAGC CTCAACTTCT GGGTTCTTGT
  ATGCTTTTGT GTGCTGGACC ACAAACCTCA AATTTAGTCT CACAGGTCTT CAACGCGCCC
  CCAATTCATA TCAGAACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46749338	NES10738098	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32931410					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749338	NES10738098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89177980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13416	CpG island 13416	within coordinates
Efna1	ephrin A1	1057 bp downstream
Rr580014	regulatory region 580014	1383 bp distal
Rr580015	regulatory region 580015	within coordinates
Rr580016	regulatory region 580016	40 bp distal
Rr580017	regulatory region 580017	1199 bp proximal
Slc50a1	solute carrier family 50 (sugar transporter), member 1	103 bp upstream
Tssr30087	transcription start site region 30087	1234 bp upstream
Tssr34108	transcription start site region 34108	185 bp upstream
Tssr34109	transcription start site region 34109	122 bp upstream