rs32931407 SNP Detail

Summary

• ID
  rs32931407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89177722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGATCTC CCCCCTCAGG
  CCAAGAGGCA GCCTCGCCTT GGACCTCAAA TCATCCAATC CTATTCCACT ATTATTCTGG
  GTTCCAAAAG CAGCAAGATA TTGCAGCCAC GTCTCTTGCC CGCTTTCATT TCTTGACTTC
  CTGCCCCAGC CCAGTCCATC CACACTCTCA CAGGCCAGTG GAGAACATGC CCAGGGTGAA
  R
  AGCACGCAGG CACTAGAAAG GAAAGAGTCT GCCACGCCGC CCGCCTCCAT CCCACCGGAG
  CCGGTTCCCT AGCCCAGCGC GGAGTTCCAG TAGCTCAGAC CCGGAGCTGC GGAAGGCGAA
  GCTCCGCCCT TCCCCGTGGA ACCGCGCCGG AACCCGCCCT CGCCCGAACT TCACCGGAAC
  TGGGGACCCA GCCAAACCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46749335	NES10738097	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs32931407					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749335	NES10738097	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89177722 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13416	CpG island 13416			within coordinates
Efna1	ephrin A1			1315 bp downstream
Rr580014	regulatory region 580014			1125 bp distal
Rr580015	regulatory region 580015			70 bp proximal
Rr580016	regulatory region 580016			197 bp proximal
Rr580017	regulatory region 580017			1457 bp proximal
Slc50a1	solute carrier family 50 (sugar transporter), member 1			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr30087	transcription start site region 30087			1492 bp upstream
Tssr34108	transcription start site region 34108			66 bp downstream
Tssr34109	transcription start site region 34109			74 bp downstream