rs32931404 SNP Detail

Summary

• ID
  rs32931404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89176674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGGACA GCCAGCAGGG
  TTGCCGTCTG CAGGAGCACA CCATGCTGCA GGGGAGAGGC GTCTTACATG CATCTGTACC
  CAGAACACTC ATCTCTCTGC TGGAATTGCC TCCTCCTGTC TTCTGCCATG CTCTAATGGG
  GAAATCAACT TTTATCCCGG CCTTCACGTC AGCCTCTCAC CACTCAGTTA TTTGAGAGAA
  R
  TCTCAGCCAC ACAACACTGG AGATCCCCAG GGAAGGGGAG AGCCATTTTT AGATCCCTCC
  CCTTTTCATG TGAGCTTCAC ATACATGTAC AATAAGAGAC CAATAAATGT TAGTGTGACT
  GAGTGGGGAA GCAGAGCGAA TGGCCATTCT TAGCCATTGG CCCTGGTCCT AACCCTAAAG
  GAACTATCAG ACAGTATAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46749332	NES10738096	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32931404					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749332	NES10738096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89176674 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13416	CpG island 13416			724 bp proximal
Rr580013	regulatory region 580013			1348 bp distal
Rr580014	regulatory region 580014			77 bp distal
Rr580015	regulatory region 580015			1118 bp proximal
Rr580016	regulatory region 580016			1245 bp proximal
Slc50a1	solute carrier family 50 (sugar transporter), member 1			Intron
				Noncoding-Transcript-Variant
Tssr34108	transcription start site region 34108			1114 bp downstream
Tssr34109	transcription start site region 34109			1122 bp downstream