ATATCGTCCA CTCTGTACCA GGCAACAGCT CCAGTTCTCA CACCGGCCAA AATCACTGGC AAGGGCAAGA AGAGAAACTA ACTGTGAATG AGTAATAAAG TTGTGTCTTT GTAGCTGTGT CTGTGAACTG TGACAGTTGA CCTCATCTGC CAGTGCCCAA GCTGGGCAGG TGCTGCAGCA TCCTTGCCCT CCACTGACAA R AGAGTCATTG TGGGAGAAGA ACGCAAAAAT GATCGGGGTC TTAACCTATG GGGAGAGAGG TTAAACAGTA GATAATACAG GAGGGCCTGC CTTTCAGAAC CTAACTGGTG TGCGTGTGTG TGTGTGTGTG GGGGGGGTAT GTGCACATAT GTTGGGGTGG TGCACATTGC GTGCGTGTAA GGACCCTGGG TTGGTCACCG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46749233 | NES10738941 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | A | G | G | G | G | G | G |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
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rs32930904 | SNP | G | G | G | G | G | A | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46749233 | NES10738941 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:89157118 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13414 | CpG island 13414 | 1628 bp proximal | ||||||
Krtcap2 | keratinocyte associated protein 2 | mRNA-UTR | ||||||
Rr367466 | regulatory region 367466 | 1484 bp upstream | ||||||
Rr580001 | regulatory region 580001 | 442 bp proximal | ||||||
Rr580002 | regulatory region 580002 | 523 bp proximal | ||||||
Rr580003 | regulatory region 580003 | 740 bp proximal | ||||||
Rr580004 | regulatory region 580004 | 784 bp proximal | ||||||
Rr580005 | regulatory region 580005 | 1654 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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