rs32930904 SNP Detail

Summary

• ID
  rs32930904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89157118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCGTCCA CTCTGTACCA
  GGCAACAGCT CCAGTTCTCA CACCGGCCAA AATCACTGGC AAGGGCAAGA AGAGAAACTA
  ACTGTGAATG AGTAATAAAG TTGTGTCTTT GTAGCTGTGT CTGTGAACTG TGACAGTTGA
  CCTCATCTGC CAGTGCCCAA GCTGGGCAGG TGCTGCAGCA TCCTTGCCCT CCACTGACAA
  R
  AGAGTCATTG TGGGAGAAGA ACGCAAAAAT GATCGGGGTC TTAACCTATG GGGAGAGAGG
  TTAAACAGTA GATAATACAG GAGGGCCTGC CTTTCAGAAC CTAACTGGTG TGCGTGTGTG
  TGTGTGTGTG GGGGGGGTAT GTGCACATAT GTTGGGGTGG TGCACATTGC GTGCGTGTAA
  GGACCCTGGG TTGGTCACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46749233	NES10738941	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32930904					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749233	NES10738941	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89157118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13414	CpG island 13414	1628 bp proximal
Krtcap2	keratinocyte associated protein 2	mRNA-UTR
Rr367466	regulatory region 367466	1484 bp upstream
Rr580001	regulatory region 580001	442 bp proximal
Rr580002	regulatory region 580002	523 bp proximal
Rr580003	regulatory region 580003	740 bp proximal
Rr580004	regulatory region 580004	784 bp proximal
Rr580005	regulatory region 580005	1654 bp proximal