rs32930131 SNP Detail

Summary

• ID
  rs32930131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89157021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CACTGGCAAG GGCAAGAAGA GAAACTAACT GTGAATGAGT AATAAAGTTG
  Y
  GTCTTTGTAG CTGTGTCTGT GAACTGTGAC AGTTGACCTC ATCTGCCAGT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46749230	NES10738939	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32930131					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749230	NES10738939	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89157021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13414	CpG island 13414	1725 bp proximal
Krtcap2	keratinocyte associated protein 2	mRNA-UTR
Rr367466	regulatory region 367466	1581 bp upstream
Rr580001	regulatory region 580001	539 bp proximal
Rr580002	regulatory region 580002	620 bp proximal
Rr580003	regulatory region 580003	837 bp proximal
Rr580004	regulatory region 580004	881 bp proximal
Rr580005	regulatory region 580005	1751 bp proximal