rs32927461 SNP Detail

Summary

• ID
  rs32927461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135749887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAGACG AAGCTAGCCT
  TAAACTCACA GAGATCCACC TGCCTCTACG TCCTAAGGGC CAGGATTAAA GTTGTATGCC
  ACCACCACCT GGCTCCATTT AAAAATAAAT TAAATCATAA TGAATAAAAA GTCATAATAT
  ATTAAAAACC AAACTGAACT ACATGAGATT CTGTCAGAAA AGAGCCGCTG GGCGTGGTGG
  Y
  GCACGCCTTT AATCCCAGCA CTCGGGAGGT AGAGGCAGGA GGATTTCTGA GTTCAAGGCC
  AGCCTGGTCT ACAAAGTGAA TTCCAGGACA GCCAGGGCTA TACAGAGAAA CCCTGTCTCG
  AAAAACCAAA AAAGAAAAAA AGAAAAGAAA AGAGCCAGGC AGTGGTGATG CATGCCTTTA
  ATCCCAGCAC TTGGGAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45713932	mCV24786248	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32927461					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135749887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	462 bp distal
Eloa	elongin A	927 bp upstream
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	604 bp downstream
Rr602239	regulatory region 602239	824 bp distal
Rr602240	regulatory region 602240	565 bp distal
Rr602241	regulatory region 602241	375 bp distal
Tssr44023	transcription start site region 44023	911 bp upstream
Tssr44024	transcription start site region 44024	882 bp upstream
Tssr44025	transcription start site region 44025	840 bp upstream