rs32926568 SNP Detail

Summary

• ID
  rs32926568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:88999799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACAAGGG TCCCGCTGCA
  GGGCCCCCTG CTTTCCTTGC CCCCGGTGTC TCCCGGGGGC GGGGGTGTGC TCAGAGGCCC
  CTCTCGTAGT TCAGGACGGC GGGACAAGTG CAGGCCTAGG GAGACATGCT GGAGATGGAT
  GTGATTGAGG TTGCAGAGTA AAGCCCGCTG AGGGGACAGC ATGGTGCCGA GGGAGGACGA
  Y
  GTATGGCTTT CAGAGAACCA AGAGGATCCA GCGTCTCACA TCCACCTACC TGACAGTGTA
  GATGCAGACC TAGAAAACAG GGGTGGTTGA AACCTAGATC ACGGGTAAGG GCACTGGAGG
  TGACTGAGGA CTAGAACAGG CCTGGGAAGG ATCTGGCTGC TTTGGGAGAT ATTTAAATGA
  GATTCAAATC ACCACGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46747919	NES10744537	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32926568					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46747919	NES10744537	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88999799 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13396	CpG island 13396	772 bp distal
Cpgi13397	CpG island 13397	563 bp proximal
Fdps	farnesyl diphosphate synthetase	1096 bp downstream
Rr579943	regulatory region 579943	1957 bp distal
Rr579944	regulatory region 579944	1634 bp distal
Rr579945	regulatory region 579945	788 bp proximal
Rusc1	RUN and SH3 domain containing 1	mRNA-UTR
Tssr34085	transcription start site region 34085	922 bp upstream
Tssr34086	transcription start site region 34086	793 bp downstream
Tssr34087	transcription start site region 34087	866 bp downstream
Tssr34088	transcription start site region 34088	877 bp downstream