rs32926565 SNP Detail

Summary

• ID
  rs32926565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:88999351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTCCAGGT CAGGTCCAGG TGGAGAAGAT ATTCCAGAGC
  AAGAATCAGG AGAGCAACAG AAACTGTCTG GAGAGCAGGT GCTAGGGCCC GCTGGAGCCA
  R
  AGGAGAGCCC AGCTCCAAGG TGCTAGGCTG AGGGTTTGCA TCCTCATTAC CAGGCAGGTC
  TCGCGAGTAG ACTGACACTG GAGACTCATC AGGGCTAAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46747916	NES10744536	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32926565					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46747916	NES10744536	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88999351 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13396	CpG island 13396	324 bp distal
Cpgi13397	CpG island 13397	1011 bp proximal
Fdps	farnesyl diphosphate synthetase	1544 bp downstream
Gm65858	predicted gene, 65858	1911 bp downstream
Rr397780	regulatory region 397780	1827 bp downstream
Rr579943	regulatory region 579943	1509 bp distal
Rr579944	regulatory region 579944	1186 bp distal
Rr579945	regulatory region 579945	1236 bp proximal
Rusc1	RUN and SH3 domain containing 1	Coding-Synonymous
Tssr34085	transcription start site region 34085	474 bp upstream
Tssr34086	transcription start site region 34086	1241 bp downstream
Tssr34087	transcription start site region 34087	1314 bp downstream
Tssr34088	transcription start site region 34088	1325 bp downstream