rs32925902 SNP Detail

Summary

• ID
  rs32925902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:88995853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTCTGG GTACCCAACG
  GAGGCCAGAG GAGTTGGGCT ACAGGACTGA CAGTTATCTC TCTGCCCGTG TGGAACCATT
  GCCTCCGGAG GGAGACTTGT CCAGTTAGTG CTGTTAACTG AGACATTGTA TAGGCTAGAA
  AGGGAAAGGC CTGGGAACAC ACACAGGGGT GGGGACCTGC CTTTCAGGGT AGAGCTGGAC
  Y
  CTTGCTGAGG AAGAGACCCA CAGGAGAATT GAAAGCTATG AGGAAGCAAG AAGGGGAAGG
  GACCTATTCC AGGTGTAGGG AATAAGAGAT GGCCCCAAGG CAAGGAAGAC CTCAAGTGGA
  AAAATATGAA GGGCTACAGA GCCTGGGCTG AGTCTCTTCT CATACTCTTC CCCTAGATGT
  GTATTCTGAC CTCACAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
ss46747913	NES10744535	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
rs32925902					SNP	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46747913	NES10744535	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88995853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13395	CpG island 13395	714 bp distal
Cpgi13396	CpG island 13396	1082 bp proximal
Gm65858	predicted gene, 65858	215 bp upstream
Rr397780	regulatory region 397780	1370 bp upstream
Rr579941	regulatory region 579941	874 bp distal
Rr579942	regulatory region 579942	128 bp proximal
Rr579943	regulatory region 579943	1489 bp proximal
Rusc1	RUN and SH3 domain containing 1	Intron
Tssr30034	transcription start site region 30034	222 bp upstream
Tssr34080	transcription start site region 34080	1114 bp downstream
Tssr34081	transcription start site region 34081	1153 bp downstream
Tssr34082	transcription start site region 34082	1202 bp downstream
Tssr34083	transcription start site region 34083	1308 bp downstream
Tssr34084	transcription start site region 34084	1409 bp downstream